bioenergy-research-centers/bioenergy.org

AI Summary: The task involves identifying all datasets across the bioenergy.org project that link to the soon-to-be-decommissioned JGI Genome Portal. For each affected dataset, a replacement link (if available) must be found and the database updated. If no replacement is found, a plan for handling the broken link needs to be developed. This includes investigating whether similar issues exist in other BRC datasets.

AI Summary: The task is to fix 20 JBEI records that are failing validation against the brc_schema_0.1.2.json schema. The errors are consistently related to the 'creatorName' field needing to be renamed to 'name' and the 'relatedItem' field needing to be an array instead of a single object. This requires updating the JBEI data feed (likely a JSON file) to conform to the schema, re-running the import script, and verifying the fix.

AI Summary: The task is to fix 11 GLBRC data records failing validation against the brc_schema_0.1.0. This involves correcting date formats (to YYYY-MM-DD), updating repository names (e.g., 'SRA' to 'NCBI SRA'), ensuring NCBI TaxID is an integer, and deciding how to handle the decommissioned 'JGI Genome Portal' repository. The corrections should be made in the GLBRC data feed (https://fair-data.glbrc.org/glbrc.json) and then re-run the validation script to confirm the fixes.