A centralized location for storing curated data from cBioPortal

2 Open Issues Need Help Last updated: Aug 6, 2025

Open Issues Need Help

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Bioinformatics Genomic Data Management

AI Summary: Enhance the cBioPortal datahub's validation scripts to verify the HTTP status code (expecting 200) of resource URLs listed in `data_resource_*.txt` files. This ensures that all linked resources are accessible. The task involves modifying existing Python scripts and potentially requires familiarity with HTTP requests and status codes.

Complexity: 3/5
good first issue

A centralized location for storing curated data from cBioPortal

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Bioinformatics Genomic Data Management

AI Summary: The CircleCI workflows for daily and weekly testing of the cBioPortal datahub are failing. The daily workflow shows discrepancies between the number of studies on the cBioPortal website and the datahub. The weekly workflow has permission issues with a validation script and reports errors. The task requires investigating and resolving these issues, ensuring all studies are correctly imported and the validation script executes without errors.

Complexity: 4/5
good first issue

A centralized location for storing curated data from cBioPortal

HTML