Open Issues Need Help
View All on GitHubAI Summary: A user encountered an error when running the `nf-core` `annotsv_annotsv` module because AnnotSV could not find a specific annotation file. The issue stems from a directory name change in the downloaded annotations, where `NCBIgeneID` was renamed to `NCBIandHGNCgeneID`, causing a path mismatch.
Annotation and Ranking of Structural Variation
AI Summary: The user is encountering an error message indicating that annotation files are missing. The task is to determine how to download or obtain the necessary annotation files ('/Annotations_Human/Gene-based/NCBIandHGNCgeneID/geneSymbol_NCBIandHGNCgeneID.tsv') for the AnnotSV tool, considering the user's conda installation and Tcl/Tk version.
Annotation and Ranking of Structural Variation