Pipeline for assembling outward from seed sequences in large metagenomic datasets

2 Open Issues Need Help Last updated: Aug 22, 2025

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enhancement good first issue

Pipeline for assembling outward from seed sequences in large metagenomic datasets

Python

AI Summary: Develop a visualization tool to generate pileup visualizations of contigs assembled by the outward assembly pipeline. The tool should handle pileups of up to a few thousand reads efficiently, and gracefully handle larger datasets by switching to a coverage plot instead. Integration with the existing outward assembly pipeline is required.

Complexity: 4/5
enhancement good first issue

Pipeline for assembling outward from seed sequences in large metagenomic datasets

Python