scanpy good first issues (Python)

Minimum cell cutoff in sc.pl.dotplot 5 days ago

good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

ValueError: cannot convert float NaN to integer 13 days ago

good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Refactor `BasePlot` not to create a dataframe representation of the data 30 days ago

Area - Plotting 🌺 Area – Performance 🐌 good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

sc.pl.paga: TypeError: paga() got an unexpected keyword argument 'ncols' about 1 month ago

Area - Plotting 🌺 good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Inline example plots in docs 4 months ago

Area - Documentation 📒 Area - Plotting 🌺 good first issue Meta

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

_sparse_nanmean is inefficient 7 months ago

Area – Performance 🐌 good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Compute UMAP from pre-existing distance matrix 10 months ago

good first issue Area - Topology 🍩

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Output numer of observations aggregated from `scanpy.get.aggregate` 10 months ago

Area – Differential Expression good first issue Area – API

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

scverse/scanpy

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