PeakATail good first issues (Python)

add pair wise comparison between inputetd cell groups 25 days ago

enhancement help wanted

11

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

migrate to h5ad format 25 days ago

enhancement help wanted

BMGLab/PeakATail

11

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

get readlenand cb from bam 25 days ago

enhancement good first issue

BMGLab/PeakATail

11

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

Add PAS identifier to the ENSG ids in the `pas_gene.tsv` 25 days ago

enhancement good first issue

BMGLab/PeakATail

11

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

please rename the output file names 25 days ago

enhancement good first issue

BMGLab/PeakATail

11

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

BMGLab/PeakATail

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