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View All on GitHub Bioinformatics • Enzyme Function Prediction
AI Summary: The task is to determine how to use a custom FASTA database with the EFI-EST code-based tool for SSN analysis, addressing two key issues: 1) substituting the default FASTA database with a custom one for BLAST comparisons, and 2) incorporating custom metadata (like taxonomy information) for sequences in the custom database into the generated SSN output. This involves understanding the tool's input requirements and potentially modifying the code or creating supplementary files to handle custom annotations.
Complexity:
4/5
help wanted
Flexible pipeline for building Sequence Similarity Networks, Genome Neighborhood Networks, and Genome Neighborhood Diagrams for the purpose of elucidating the function of enzymes.
Perl