gEAR good first issues (Jupyter Notebook)

Add dataset citation to plot downloads 17 days ago

enhancement good first issue

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

add colorblind color option for various plotting types 19 days ago

enhancement good first issue site_comment 2

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

FAIR / TRUST work 27 days ago

good first issue FAIR_TRUST

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Migrate from diffxpy to PyDESeq2 5 months ago

good first issue Page: multigene curator Low Priority 3rd-party tool

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

API for data download 5 months ago

good first issue

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Download expression values from multigene displays 7 months ago

good first issue Page: multigene curator user request

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Dataset Explorer - Make "long description" section support HTML embedding 8 months ago

good first issue Page: dataset explorer

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Add 'how to cite' for any dataset 8 months ago

good first issue FAIR_TRUST

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Expression page - Add ability to download expression data for just a gene or subset of genes 9 months ago

enhancement good first issue Page: search display pages

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Request: Option to Download Plot Data 9 months ago

good first issue question Page: search display pages

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Add link to gene cart manager on comparison tool 9 months ago

enhancement good first issue 2

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Update available analysis tool options based on data type 10 months ago

bug enhancement good first issue Low Priority

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Add dataset level metadata to download bundle 11 months ago

good first issue Low Priority FAIR_TRUST

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Implement internal system for better usage tracking 11 months ago

enhancement good first issue

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Upload validator needs to check against table column widths 11 months ago

bug good first issue

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Allow users to 'favorite' dataset collections 11 months ago

good first issue

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Allow users to filter user history table on favorites 11 months ago

good first issue

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Ability to track download counts by individual dataset 11 months ago

enhancement good first issue

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

Need a way to track counts of permalink usage for stats 11 months ago

good first issue

IGS/gEAR

22

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Jupyter Notebook

#bulk-rna-seq#data-archive#gene-expression#rna-seq#single-cell#single-cell-analysis

IGS/gEAR

Open Issues Need Help