Open Issues Need Help
View All on GitHubAI Summary: This issue requests the creation of a Digital Object Identifier (DOI) for the pipeline using the ZENODO workflow. The task involves obtaining the DOI through ZENODO, updating the `README.md` file with this information, and creating a new `CITATION.cff` file to formally cite the pipeline.
This repository contains a fully automated, robust, and reproducible pipeline for processing raw, paired-end RNA-Seq data from FASTQ files to a final gene-count matrix.
AI Summary: This issue requests the addition of a 'quick start' section to the project's README file. It is labeled as an enhancement and is specifically marked as a 'good first issue', indicating it's suitable for new contributors.
This repository contains a fully automated, robust, and reproducible pipeline for processing raw, paired-end RNA-Seq data from FASTQ files to a final gene-count matrix.
AI Summary: This issue proposes adding a feature to allow users to customize arguments passed to integrated third-party tools. A key requirement is to ensure that sensible default values are established for these customizable arguments.
This repository contains a fully automated, robust, and reproducible pipeline for processing raw, paired-end RNA-Seq data from FASTQ files to a final gene-count matrix.
AI Summary: This issue proposes to refactor the project's documentation by extracting the environment creation steps, specifically those using miniforge, into a new, separate markdown file. This new document should then be linked from the main manual page to maintain accessibility.
This repository contains a fully automated, robust, and reproducible pipeline for processing raw, paired-end RNA-Seq data from FASTQ files to a final gene-count matrix.