Open Issues Need Help
View All on GitHub Phagescope file size is quite big about 2 months ago
AI Summary: The Phagescope and PLSDB databases, especially Phagescope, result in very large file sizes upon download. The issue proposes modifying the `download_spacepharer_database.sh` script to allow Spacepharer to accept gzipped files, potentially by removing the `-z` flag from tar commands, to reduce the downloaded size. This aims to retain the comprehensive Phagescope database, though the impact on metadata gzip status needs verification.
Complexity:
2/5
enhancement good first issue
Exploring the diversity of CRISPR spacers in Campylobacter jejuni & coli
Python
#bacterial-genomics#bioinformatics#campylobacter#crispr-cas-systems#snakemake
Fasta headers are complicated 2 months ago
enhancement good first issue
Exploring the diversity of CRISPR spacers in Campylobacter jejuni & coli
Python
#bacterial-genomics#bioinformatics#campylobacter#crispr-cas-systems#snakemake