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View All on GitHub [Documentation] Create a Google Colab demo notebook for easy evaluation about 2 hours ago
enhancement good first issue
A PyTorch-based Deep Learning framework utilizing a 1D/2D Dilated Convolutional Neural Network to predict 3D chromatin conformation (Hi-C) from 1D epigenetic accessibility signals (ATAC-seq).
Python
#ai#atac-seq#bioinformatics#chromatin#cnn#computational-biology#deep-learning#genomics#hic#machine-learning#python#python3#pytorch
[Feature] Implement Laplacian/Sobel edge loss to improve stratum correlation (SCC) about 2 hours ago
enhancement good first issue
A PyTorch-based Deep Learning framework utilizing a 1D/2D Dilated Convolutional Neural Network to predict 3D chromatin conformation (Hi-C) from 1D epigenetic accessibility signals (ATAC-seq).
Python
#ai#atac-seq#bioinformatics#chromatin#cnn#computational-biology#deep-learning#genomics#hic#machine-learning#python#python3#pytorch
[Enhancement] Add CTCF BigWig track as an additional 1D input channel about 2 hours ago
enhancement good first issue
A PyTorch-based Deep Learning framework utilizing a 1D/2D Dilated Convolutional Neural Network to predict 3D chromatin conformation (Hi-C) from 1D epigenetic accessibility signals (ATAC-seq).
Python
#ai#atac-seq#bioinformatics#chromatin#cnn#computational-biology#deep-learning#genomics#hic#machine-learning#python#python3#pytorch