Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

22 stars 6 forks 22 watchers Jupyter Notebook MIT License
bftools bioformats cellsens converter cucim fast generic olympus openslide pyfast pyramidal pyvips tif tiff vips vsi wsi
1 Open Issue Need Help Last updated: Aug 21, 2025

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Bioinformatics Whole Slide Imaging Tools

AI Summary: The user is following a macOS conversion tutorial and is encountering an 'Skipping already converted slide' message for a file they claim has not been previously converted. They are seeking a solution to this issue, as the command completes instantly without performing the conversion.

Complexity: 1/5
good first issue

Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

Jupyter Notebook
#bftools#bioformats#cellsens#converter#cucim#fast#generic#olympus#openslide#pyfast#pyramidal#pyvips#tif#tiff#vips#vsi#wsi