aqlaboratory

aqlaboratory/openfold-3

A fully open source biomolecular structure prediction model based on AlphaFold3

12 good first / help-wanted issues · Python · last activity Sep 24, 2026

878 stars 172 forks 878 watchers Python Apache License 2.0
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12 Open Issues Need Help Last updated: Sep 24, 2026

Open Issues Need Help

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Add template processing and fetching to the `align-msa-server` command 26 days ago
enhancement good first issue
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
Update contributor docs with how to use `pixi` for development 26 days ago
documentation enhancement good first issue
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
[BUG] Flaky test about 1 month ago
bug good first issue contributions welcome
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
[BUG] Docker image error - No module named 'cutlass_library' about 1 month ago
bug good first issue Installation contributions welcome
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
Allow residue/component identifier specification for SMILES input. about 1 month ago
enhancement good first issue contributions welcome
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
raw colabfold outputs always deleted even if `cleanup_msa_dir` is disabled about 1 month ago
bug good first issue data preprocessing contributions welcome
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
[BUG] Query IDs with dots in the name is not allowed. 7 months ago
bug good first issue contributions welcome
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
Add an option to change the timeout length of Function _preprocess_templates_for_query ? 7 months ago
enhancement good first issue data preprocessing
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
[BUG] Multi-user machine /tmp/of3-directories cause errors 7 months ago
bug good first issue
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
Allow to specify the number of the first residue of a chain 11 months ago
enhancement good first issue contributions welcome
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
Add description field to input JSON 11 months ago
enhancement good first issue contributions welcome
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python
Is there a way to provide an installation-default runner_yaml file? 12 months ago
enhancement help wanted Installation
aqlaboratory/openfold-3
878

A fully open source biomolecular structure prediction model based on AlphaFold3

Python