biocore

biocore/gemelli

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

87 stars 20 forks 87 watchers Python BSD 3-Clause "New" or "Revised" License
compositional-data-analysis ctf joint-rpca microbiome qiime2 rclr rpca tempted
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1 Open Issue Need Help Last updated: Jun 30, 2026

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Question about native Windows support for Gemelli joint-RPCA 1 day ago
enhancement help wanted
biocore/gemelli
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Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

Python
#compositional-data-analysis#ctf#joint-rpca#microbiome#qiime2#rclr#rpca#tempted