cellgeni

cellgeni/adata-cli

A CLI for operations with AnnData objects in .h5ad and .zarr files

2 good first / help-wanted issues · Python · last activity Oct 15, 2026

9 stars 1 forks 9 watchers Python MIT License
anndata h5 h5ad zarr
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2 Open Issues Need Help Last updated: Oct 15, 2026

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Help examples in cli.py still say h5ad, and two of them don't run 20 days ago
documentation good first issue
cellgeni/adata-cli
9

A CLI for operations with AnnData objects in .h5ad and .zarr files

Python
#anndata#h5#h5ad#zarr
subset and concat: check --zarr-format themselves, like the other commands 20 days ago
good first issue
cellgeni/adata-cli
9

A CLI for operations with AnnData objects in .h5ad and .zarr files

Python
#anndata#h5#h5ad#zarr