eoksen

eoksen/sra_alignment_pipeline

Nextflow pipeline designed to simplify the process of aligning sequence data from the Sequence Read Archive (SRA) to a reference genome from NCBI Nucleotide by automating the process of downloading data, performing quality control, aligning sequences, and calling variants.

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1 Open Issue Need Help Last updated: Jul 1, 2026

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[upstream] Contribute reference-fetch-by-nuccore-accession to nf-core/fetchngs about 15 hours ago
enhancement help wanted priority:low nf-core-hardening
eoksen/sra_alignment_pipeline
0

Nextflow pipeline designed to simplify the process of aligning sequence data from the Sequence Read Archive (SRA) to a reference genome from NCBI Nucleotide by automating the process of downloading data, performing quality control, aligning sequences, and calling variants.

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