a dataloader to work with large single cell datasets from lamindb

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dataloader lamindb ml pytorch single-cell-rna-seq
2 Open Issues Need Help Last updated: Sep 12, 2025

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a dataloader to work with large single cell datasets from lamindb

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#dataloader#lamindb#ml#pytorch#single-cell-rna-seq

AI Summary: Debug the `populate_my_ontology()` function in the `scdataloader` Python package. The function is failing with an `AttributeError` related to the `bionty` library, indicating a missing attribute or an issue with the library's import. The issue might stem from an incompatibility between the `scdataloader` package and the `bionty` library version, or a problem with the way the `bionty` library is being used within the function. The solution likely involves updating the `bionty` library, adjusting the function's code to correctly access the intended attributes, or resolving any dependency conflicts.

Complexity: 4/5
bug help wanted

a dataloader to work with large single cell datasets from lamindb

Jupyter Notebook
#dataloader#lamindb#ml#pytorch#single-cell-rna-seq