lanl

lanl/PyBNF

An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.

25 stars 20 forks 25 watchers Python Other
View on GitHub
3 Open Issues Need Help Last updated: Aug 21, 2026

Open Issues Need Help

View All on GitHub
The contributor setup notes describe a workaround that may no longer be needed about 2 hours ago
enhancement good first issue
lanl/PyBNF
25

An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.

Python
Temporary dask directories are never removed because dask changed the name about 2 hours ago
bug good first issue
lanl/PyBNF
25

An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.

Python
Use scipy.stats functions for defining distributions 5 months ago
enhancement good first issue high priority
lanl/PyBNF
25

An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.

Python