melhzy

melhzy/pubmed-stream

From a PubMed search to a knowledge graph of the literature: full texts from PubMed Central, the evidence around key papers and an Obsidian knowledge graph, from the command line, Python or an AI assistant. Includes a study of the retracted Aβ*56 paper.

1 good first / help-wanted issue · Jupyter Notebook · last activity Oct 23, 2026

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bioinformatics knowledge-graph literature-review ncbi obsidian pubmed pubmed-central python retraction text-mining
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melhzy/pubmed-stream
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From a PubMed search to a knowledge graph of the literature: full texts from PubMed Central, the evidence around key papers and an Obsidian knowledge graph, from the command line, Python or an AI assistant. Includes a study of the retracted Aβ*56 paper.

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#bioinformatics#knowledge-graph#literature-review#ncbi#obsidian#pubmed#pubmed-central#python#retraction#text-mining