Open Issues Need Help
View All on GitHub Article from DOI problems (DOI to PMID converter utility only works for PMC articles) about 1 year ago
help wanted good first issue
metapub/metapub metapub/metapub Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
Open project →
126
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
Python
ClinVarFetcher broken due to API change about 1 year ago
AI Summary: Update the Metapub library's ClinVarFetcher to use the new NCBI ClinVar API (VCV format) instead of the deprecated format. This involves changing the `rettype` parameter in the API call and modifying the `ClinVarVariant` class to parse the new XML structure. The fix requires updating the code in `clinvarfetcher.py` and potentially other related files to handle the new XML schema.
Complexity:
4/5
bug good first issue
metapub/metapub metapub/metapub Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
Open project →
126
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
Python