A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

bioinformatics bioinformatics-pipeline wdl wdl-devtools wdl-workflow workflow workflow-engine
1 Open Issue Need Help Last updated: Jun 25, 2025

Open Issues Need Help

View All on GitHub

AI Summary: The task is to fix a bug in the `sprocket run` command where the output JSON is missing the workflow or task name prefix. The issue is identified as a missing call to `outputs.with_name(name)` in the code, which should be a relatively straightforward addition to correct the JSON output to conform to the WDL specification.

Complexity: 2/5
bug good first issue

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Rust
#bioinformatics#bioinformatics-pipeline#wdl#wdl-devtools#wdl-workflow#workflow#workflow-engine