SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

bioimage-analysis bioimage-informatics bioimage-tools bioimaging cell-segmentation gating histological-images histology image-analysis-workflows imaging-mass-cytometry imc immunofluorescence life-sciences-image mcd ome-tiff single-cell-analysis tissue-analysis tissue-classification
1 Open Issue Need Help Last updated: Sep 11, 2025

Open Issues Need Help

View All on GitHub
All Cells/Samples UMAP about 2 months ago
enhancement help wanted

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

R
#bioimage-analysis#bioimage-informatics#bioimage-tools#bioimaging#cell-segmentation#gating#histological-images#histology#image-analysis-workflows#imaging-mass-cytometry#imc#immunofluorescence#life-sciences-image#mcd#ome-tiff#single-cell-analysis#tissue-analysis#tissue-classification