Open Issues Need Help
View All on GitHub update stub: pharokka/installdatabases about 2 months ago
bug good first issue
nf-core/modules
374
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows
picard/collecthsmetrics fails for gzipped genomes about 2 months ago
bug good first issue
nf-core/modules
374
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows
bug good first issue
nf-core/modules
374
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows
update stub: gatk4/mergevcfs 2 months ago
bug good first issue
nf-core/modules
374
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows
GATK4_MUTECT2 fails for gzipped references 3 months ago
AI Summary: The task is to modify the GATK4_MUTECT2 Nextflow module to accept a gzipped FASTA index file (`.gzi`) as input, resolving an issue where the module fails when using gzipped reference genomes. This involves updating the process definition within the module's code to include the `.gzi` file as a parameter.
Complexity:
3/5
bug good first issue
nf-core/modules
374
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows