Repository to host tool-specific module files for the Nextflow DSL2 community!

dsl2 modules nextflow nf-core nf-test pipelines workflows
5 Open Issues Need Help Last updated: Sep 12, 2025

Open Issues Need Help

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Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows
bug good first issue

Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows

Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows
bug good first issue

Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows

AI Summary: The task is to modify the GATK4_MUTECT2 Nextflow module to accept a gzipped FASTA index file (`.gzi`) as input, resolving an issue where the module fails when using gzipped reference genomes. This involves updating the process definition within the module's code to include the `.gzi` file as a parameter.

Complexity: 3/5
bug good first issue

Repository to host tool-specific module files for the Nextflow DSL2 community!

Nextflow
#dsl2#modules#nextflow#nf-core#nf-test#pipelines#workflows