Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

annotation bioinformatics cancer conda containers gatk4 genomics germline next-generation-sequencing nextflow nf-core pipeline pre-processing reproducible-research somatic target-panels variant-calling whole-exome-sequencing whole-genome-sequencing workflow
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enhancement good first issue

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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#annotation#bioinformatics#cancer#conda#containers#gatk4#genomics#germline#next-generation-sequencing#nextflow#nf-core#pipeline#pre-processing#reproducible-research#somatic#target-panels#variant-calling#whole-exome-sequencing#whole-genome-sequencing#workflow