Open Issues Need Help
View All on GitHub Multiqc report includes contig taxonomic classifications about 2 months ago
enhancement help wanted priority
nf-core/viralmetagenome nf-core/viralmetagenome A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Open project →
40
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Nextflow
#epidemiology#fastq#nextflow#nf-core#ngs#pipeline#viral-metagenomics#virology#virus-genomes#workflow
Optionally use host-filtered reads in downstream mapping steps about 2 months ago
enhancement help wanted priority
nf-core/viralmetagenome nf-core/viralmetagenome A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Open project →
40
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Nextflow
#epidemiology#fastq#nextflow#nf-core#ngs#pipeline#viral-metagenomics#virology#virus-genomes#workflow
Make custom annotation database using ncbi virus about 2 months ago
documentation good first issue priority website
nf-core/viralmetagenome nf-core/viralmetagenome A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Open project →
40
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Nextflow
#epidemiology#fastq#nextflow#nf-core#ngs#pipeline#viral-metagenomics#virology#virus-genomes#workflow
Add support for metabuli about 2 months ago
enhancement help wanted
nf-core/viralmetagenome nf-core/viralmetagenome A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Open project →
40
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Nextflow
#epidemiology#fastq#nextflow#nf-core#ngs#pipeline#viral-metagenomics#virology#virus-genomes#workflow