Open Issues Need Help
View All on GitHub Addition of a parameter for the minimum depth to call a base about 1 month ago
enhancement good first issue
Assembly and intrahost/low-frequency variant calling for viral samples
Nextflow
#amplicon#artic#assembly#covid-19#covid19#illumina#long-read-sequencing#metagenomics#nanopore#nextflow#nf-core#ont#oxford-nanopore#pipeline#sars-cov-2#variant-calling#viral#virus#workflow
Homogenize nanopore normalized variant filenames 2 months ago
enhancement good first issue
Assembly and intrahost/low-frequency variant calling for viral samples
Nextflow
#amplicon#artic#assembly#covid-19#covid19#illumina#long-read-sequencing#metagenomics#nanopore#nextflow#nf-core#ont#oxford-nanopore#pipeline#sars-cov-2#variant-calling#viral#virus#workflow
Min Quality differes between iVar and mpileup 3 months ago
bug good first issue
Assembly and intrahost/low-frequency variant calling for viral samples
Nextflow
#amplicon#artic#assembly#covid-19#covid19#illumina#long-read-sequencing#metagenomics#nanopore#nextflow#nf-core#ont#oxford-nanopore#pipeline#sars-cov-2#variant-calling#viral#virus#workflow
Review params and config naming 5 months ago
documentation enhancement good first issue
Assembly and intrahost/low-frequency variant calling for viral samples
Nextflow
#amplicon#artic#assembly#covid-19#covid19#illumina#long-read-sequencing#metagenomics#nanopore#nextflow#nf-core#ont#oxford-nanopore#pipeline#sars-cov-2#variant-calling#viral#virus#workflow