sanger-tol

sanger-tol/blobtoolkit

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

13 stars 6 forks 13 watchers Nextflow MIT License
blobtools decontamination genomehubs genomics nextflow pipeline workflow
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3 Open Issues Need Help Last updated: Aug 21, 2025

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Explore computing read coverage with k-mer based method 2 months ago
help wanted question
sanger-tol/blobtoolkit
13

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

Nextflow
#blobtools#decontamination#genomehubs#genomics#nextflow#pipeline#workflow
Compute coverage stats 2 months ago
help wanted
sanger-tol/blobtoolkit
13

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

Nextflow
#blobtools#decontamination#genomehubs#genomics#nextflow#pipeline#workflow
Improve the documentation 2 months ago
documentation good first issue
sanger-tol/blobtoolkit
13

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

Nextflow
#blobtools#decontamination#genomehubs#genomics#nextflow#pipeline#workflow