sanger-tol/blobtoolkit

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

13 stars 6 forks 13 watchers Nextflow MIT License

blobtools decontamination genomehubs genomics nextflow pipeline workflow

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4 Open Issues Need Help Last updated: Aug 21, 2025

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package btk functions as nf-core modules 2 days ago

AI Summary: This issue proposes packaging additional functions from the blobtoolkit library, specifically `blobtoolkit/blobdir` and `blobtoolkit/windowstats`, as individual nf-core modules. This would allow users to leverage these specific tools within their own Nextflow pipelines without needing to run the entire sanger-tol pipeline.

Complexity: 2/5

enhancement good first issue help wanted maintain

sanger-tol/blobtoolkit

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

Nextflow

#blobtools#decontamination#genomehubs#genomics#nextflow#pipeline#workflow

Explore computing read coverage with k-mer based method 7 months ago

help wanted question

sanger-tol/blobtoolkit

Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

Nextflow

#blobtools#decontamination#genomehubs#genomics#nextflow#pipeline#workflow