sanger-tol

sanger-tol/readmapping

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

6 good first / help-wanted issues · Nextflow · last activity Jul 30, 2026

genomics nextflow pipeline read-alignment
6 Open Issues Need Help Last updated: Jul 30, 2026

Open Issues Need Help

View All on GitHub
good first issue
sanger-tol/readmapping
18

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

Nextflow
#genomics#nextflow#pipeline#read-alignment
sanger-tol/readmapping
18

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

Nextflow
#genomics#nextflow#pipeline#read-alignment
sanger-tol/readmapping
18

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

Nextflow
#genomics#nextflow#pipeline#read-alignment
help wanted good first issue maintain
sanger-tol/readmapping
18

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

Nextflow
#genomics#nextflow#pipeline#read-alignment
Implement nf-test about 1 year ago
help wanted good first issue testing maintain
sanger-tol/readmapping
18

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

Nextflow
#genomics#nextflow#pipeline#read-alignment

AI Summary: Modify the Nextflow pipeline (sanger-tol/readmapping) to compress the output samtools stats files using gzip to reduce storage space. This involves adding gzip compression to the relevant pipeline steps and potentially updating documentation.

Complexity: 2/5
enhancement good first issue
sanger-tol/readmapping
18

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

Nextflow
#genomics#nextflow#pipeline#read-alignment